CDS

Accession Number TCMCG057C03093
gbkey CDS
Protein Id XP_018468381.1
Location join(16574641..16574721,16574790..16574849,16574924..16575072,16575147..16575192,16575255..16575365,16575581..16575653,16575750..16575846,16575974..16576034,16576130..16576260,16576617..16576734,16576810..16576933,16577027..16577134,16577242..16577300,16577390..16577419)
Gene LOC108840052
GeneID 108840052
Organism Raphanus sativus

Protein

Length 415aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018612879.1
Definition PREDICTED: tRNA pseudouridine(38/39) synthase isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category J
Description tRNA pseudouridine synthase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
KEGG_ko ko:K01855        [VIEW IN KEGG]
EC 5.4.99.45        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0001522        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006400        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009982        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016556        [VIEW IN EMBL-EBI]
GO:0016853        [VIEW IN EMBL-EBI]
GO:0016866        [VIEW IN EMBL-EBI]
GO:0031119        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1990481        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGACTATGCCCTGCGGCAACGGCCTAGACTCTGAATCAACTGTAGAAACCGAATTAGCGTCTCTCCGTAACCGCGTCAAGGAGTTAGAGGCGGAGAATGCCAAATTGCTATTACAGGTTTCGAGTTGCCAATGCCAACAGATGGAAGTGAAGCATGATGTGCCTGTGTTAGATTCTGGAAATTTAGTTAGGAGAAGCAGGAGAGGTAGAAAACGAGCTGATAAAGTCATACCGACTCATCTTATCTCAAAGAGATTTGTTGCTCTCAAAATCATGTATTTTGGTAAGAGATTCTATGGCTTTTCTGCCGAAGCACAGATGGAACCAAGTATTGAGTCAGAAATTTTCAAAGCACTAGAAAGGACACGGCTTTTAGTTGGTGACAAGAAGGACTCTAATTACTCCAGGTGCGGGAGAACAGATAGAGGTGTTTCGTCAACAGGTCAGGTGATTGCTTTGTTTCTAAGGTCCAGACTGAAGACACCTTCTGGAGACTCTGAGGCCCAGAAAATTAATGGAAGACCAGAATATGATTATGTAAGAGTGTTGAATCGTGCTCTCCCTGATGACATCCGAGTTTTGGGATGGTCTCCCGCTCCCCTTGACTTTCATGCAAGGTTTAGTTGCTCGGCTAGAGAATACAAATATTTCTTCTGGAGACAAGACCTAAATCTTTCGGCCATGGACATTGCTGGTAAGAAGTTCATTGGAGAGCATGATTTCAGGAACTTTTGCAAGATGGACGTAGCAAATGTGCATTGCTATACACGACGTGTTACTTTCTTTGAAGTCTCTCCTTGTCAAAATAGTCACGAGGGTGATCAGCTTTGCACATTTACAATGAGAGGCAGTGCTTTCCTTTGGCACCAGATCCGCGCCATGGTTGCTGTGCTATTCATGATTGGACAGGGCGTCGAATCTGTTGATGTGATAGATACATTGTTGGACACCAAGAAAACGCCAAGAAAACCTCAATACCTCTTGGCCTCAGAGATCCCCTTAGTCCTCTGTACATGCGAATTCGAAAATGTCAACTTCATTTGTTCTTCTGGTGCTGCAGAGTCATTGAGGTCTCATTTTAAGAAAGAATCGCTGACGTACCAACTAGAGTCCGTGATTTTCCAGGAGGCTCTCCGGAACTGTTTACCTATAGGCAATGTGAAGAAAAGAAGAAGAAAGCAGCAATACACGTTCCTCTATTATCTCGTCCTACTGAGCCTTCGTATGAAGAACGATCTGCGAAATTGA
Protein:  
MTMPCGNGLDSESTVETELASLRNRVKELEAENAKLLLQVSSCQCQQMEVKHDVPVLDSGNLVRRSRRGRKRADKVIPTHLISKRFVALKIMYFGKRFYGFSAEAQMEPSIESEIFKALERTRLLVGDKKDSNYSRCGRTDRGVSSTGQVIALFLRSRLKTPSGDSEAQKINGRPEYDYVRVLNRALPDDIRVLGWSPAPLDFHARFSCSAREYKYFFWRQDLNLSAMDIAGKKFIGEHDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRAMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLCTCEFENVNFICSSGAAESLRSHFKKESLTYQLESVIFQEALRNCLPIGNVKKRRRKQQYTFLYYLVLLSLRMKNDLRN